MethylSeg Roadmap

1.1.0

• [ ] Develop and benchmark platform-specific defaults for HM27 and EPIC arrays

• [ ] Add optional confidence scores for MethylSeg region calls

1.2.0

• [ ] Add a scalable multi-sample workflow

  • Support efficient processing of multiple samples

  • Generate cohort-level consensus regions and recurrence statistics

2.0.0

• [ ] Replace the external ctHMM implementation with an in-house model

  • This will change the underlying model specification and may produce results that differ from MethylSeg 1.x.