# MethylSeg Roadmap

## 1.1.0

- [ ] Develop and benchmark platform-specific defaults for HM27 and EPIC arrays
- [ ] Add optional confidence scores for MethylSeg region calls

## 1.2.0

- [ ] Add a scalable multi-sample workflow
  - Support efficient processing of multiple samples
  - Generate cohort-level consensus regions and recurrence statistics

## 2.0.0

- [ ] Replace the external ctHMM implementation with an in-house model
  - This will change the underlying model specification and may produce results that differ from MethylSeg 1.x.